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Matrix Science mascot algorithm mascot 2.4
Mascot Algorithm Mascot 2.4, supplied by Matrix Science, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
https://www.bioz.com/product/mascot+2%2E4+algorithm/mascot+algorithm+2+4/bio_rxiv__2025__06__11__659225-212-1-5
Average 90 stars, based on 1 article reviews
mascot algorithm mascot 2.4 - by Bioz Stars, 2026-10
90/100 stars

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Tandem Mass Spectroscopy:

Article Title: Online Peptide Fractionation Using a Multiphasic Microfluidic Liquid Chromatography Chip Improves Reproducibility and Detection Limits for Quantitation in Discovery and Targeted Proteomics
Article Snippet: Protein Identification Data dependent MS/MS datasets were searched against the human UniProt database (release April 2014, 20266 entries) using the Mascot 2.4 algorithm (Matrix Sciences) after Mascot generic file (mgf) generation with ProteinPilot TM software 4.2.

Article Title: Integrated Proteomic and Transcriptomic-Based Approaches to Identifying Signature Biomarkers and Pathways for Elucidation of Daoy and UW228 Subtypes
Article Snippet: MS/MS datasets were searched against the human UniProt database (released April 2014, 20266 entries) using the Mascot 2.4 algorithm (Matrix Sciences) after Mascot generic file (mgf) generation according to the following criteria: peptide mass tolerance of ±10 ppm, fragment mass tolerance of 0.1 Da, maximum of 2 missed tryptic cleavage sites.

Article Title: Transcriptome of Dickeya dadantii Infecting Acyrthosiphon pisum Reveals a Strong Defense against Antimicrobial Peptides
Article Snippet: The MS/MS data were analyzed using the MASCOT 2.4 algorithm (Matrix Science) to search against the aphid proteome database (v 2.1), concatenated with additional translation of normal/infected digestive tract EST contigs , locally assembled with Vector 12.6 (Mac Vector Inc. Cary NC 27519 USA).

Article Title: Cyclophilin A supports translation of intrinsically disordered proteins and affects haematopoietic stem cell ageing.
Article Snippet: The search of resultant MS/MS spectra against the target-decoy mouse RefSeq database (released June 2015, containing 58,549 entries) was carried out with the Proteome Discoverer 2.1 interface (Thermo Fisher) with the Mascot 2.4 algorithm (Matrix Science).

Article Title: Mislocalized cytoplasmic p27 activates PAK1‐mediated metastasis and is a prognostic factor in osteosarcoma
Article Snippet: The obtained MS/MS spectra were searched against the Target‐Decoy Human RefSeq Database in Proteome Discoverer 1.4 interface (Thermo Scientific) with the Mascot 2.4 algorithm (Matrix Science).

Article Title: Online Peptide Fractionation Using a Multiphasic Microfluidic Liquid Chromatography Chip Improves Reproducibility and Detection Limits for Quantitation in Discovery and Targeted Proteomics
Article Snippet: Data dependent MS/MS datasets were searched against the human UniProt database (release April 2014, 20266 entries) using the Mascot 2.4 algorithm (Matrix Sciences) after Mascot generic file (mgf) generation with ProteinPilot TM software 4.2.

Software:

Article Title: Online Peptide Fractionation Using a Multiphasic Microfluidic Liquid Chromatography Chip Improves Reproducibility and Detection Limits for Quantitation in Discovery and Targeted Proteomics
Article Snippet: Protein Identification Data dependent MS/MS datasets were searched against the human UniProt database (release April 2014, 20266 entries) using the Mascot 2.4 algorithm (Matrix Sciences) after Mascot generic file (mgf) generation with ProteinPilot TM software 4.2.

Article Title: Integrated Proteomic and Transcriptomic-Based Approaches to Identifying Signature Biomarkers and Pathways for Elucidation of Daoy and UW228 Subtypes
Article Snippet: MS/MS datasets were searched against the human UniProt database (released April 2014, 20266 entries) using the Mascot 2.4 algorithm (Matrix Sciences) after Mascot generic file (mgf) generation according to the following criteria: peptide mass tolerance of ±10 ppm, fragment mass tolerance of 0.1 Da, maximum of 2 missed tryptic cleavage sites.

Article Title: Transcriptome of Dickeya dadantii Infecting Acyrthosiphon pisum Reveals a Strong Defense against Antimicrobial Peptides
Article Snippet: The MS/MS data were analyzed using the MASCOT 2.4 algorithm (Matrix Science) to search against the aphid proteome database (v 2.1), concatenated with additional translation of normal/infected digestive tract EST contigs , locally assembled with Vector 12.6 (Mac Vector Inc. Cary NC 27519 USA).

Article Title: Cyclophilin A supports translation of intrinsically disordered proteins and affects haematopoietic stem cell ageing.
Article Snippet: The search of resultant MS/MS spectra against the target-decoy mouse RefSeq database (released June 2015, containing 58,549 entries) was carried out with the Proteome Discoverer 2.1 interface (Thermo Fisher) with the Mascot 2.4 algorithm (Matrix Science).

Article Title: Mislocalized cytoplasmic p27 activates PAK1‐mediated metastasis and is a prognostic factor in osteosarcoma
Article Snippet: The obtained MS/MS spectra were searched against the Target‐Decoy Human RefSeq Database in Proteome Discoverer 1.4 interface (Thermo Scientific) with the Mascot 2.4 algorithm (Matrix Science).

Article Title: Online Peptide Fractionation Using a Multiphasic Microfluidic Liquid Chromatography Chip Improves Reproducibility and Detection Limits for Quantitation in Discovery and Targeted Proteomics
Article Snippet: Data dependent MS/MS datasets were searched against the human UniProt database (release April 2014, 20266 entries) using the Mascot 2.4 algorithm (Matrix Sciences) after Mascot generic file (mgf) generation with ProteinPilot TM software 4.2.



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